Literature

BOOKS AND MONOGRAPHS

1. MacDonald, S. O. and J. A. Cook. 2009. Recent Mammals of Alaska. University of Alaska Press, Fairbanks. 387pp.

2. MacDonald, S. O. and J. A. Cook. 2007. The Mammals and Amphibians of Southeast Alaska. Museum of Southwestern Biology, Special Publication 8, 191pp.

3. Cook, J. A. and S. O. MacDonald. 2013. Island life: Coming to grips with the insular nature of North Pacific Coastal Forests. Pp. 19-42, In Conservation of North Pacific Coastal Forests, Orians, G. H., and J. W. Schoen, eds. Univ. Washington Press, Seattle.

4. Dawson, N. G. and J. A. Cook. 2012. Behind the genes: Diversification of North American marten (Martes americana and Martes caurina). Pp. 23-38 In Biology and Conservation of Marten, Sables and Fisher. A New Synthesis. In Aubry, K., W. J. Zielinski, M. G. Raphael, G. Proulx, and S. W. Buskirk, eds.

5. Hoberg, E., A.V.A. Koehler, and J. A. Cook. 2012. Complex host-parasite systems in Martes: Implications for conservation biology of endemic faunas. Accepted Pp. 39-57. In Biology and Conservation of Marten, Sables and Fisher. A New Synthesis. Aubry, K., W. J. Zielinski, M. G. Raphael, G. Proulx, and S. W. Buskirk, eds.

6. Dawson, N. G., S. O. MacDonald and J. A. Cook. 2007. Endemic Mammals of the Alexander Archipelago. Chapter 6.7, Pp. 1-11. In J. Schoen and E. Dovichin (eds). The Coastal Forests and Mountains Ecoregion of Southeastern Alaska and the Tongass National Forest: A conservation Assessment and resource synthesis. Audubon & Nature Conservancy, Special Publication.

7. Yensen, E., D. J. Hafner, and J. A. Cook. 1998. Conservation priorities, action plans, and conservation strategies for North American rodents. Pp. 125-145 In North American Rodents: Action Plans for Species of Conservation Concern (D. J. Hafner, E. Yensen, and G. L. Kirkland, Jr., eds.). IUCN---the World Conservation Union, Gland, Switzerland.

8. Parker, D., J. A. Cook, and S. Lewis. 1996. Effects of timber harvest on bat activity in southeastern Alaska’s temperate rainforest. Pp. 277-292 In Bats and Forests Symposium, R. Barclay and M. Brigham (eds), Res. Branch, Ministry of Forests, Victoria, 23:1-292.

9. Yates, T. L., C. Jones, and J. A. Cook. 1996. Preservation of voucher specimens. Pp. 265-274 In Measuring and Monitoring Biological Diversity: Standard Methods for Mammals (D. Wilson, F. R. Cole, J. D. Nichols, R. Rudran, M. S. Foster. Eds.) Smithsonian Institution Press Washington, DC. 409 p.

JOURNAL ARTICLES/REVIEWS

10. Androski, A., B. J. Wiens, J. A. Cook, N. G. Dawson, and J. P. Colella. 2024. Phylogeography of Southeast Alaska mammals and implications for management of the Tongass National Forest. Journal of Wildlife Management 88: doi.org/10.1002/jwmg.22627.

11. da Silva Coelho, F. A., S. Gill, C. M. Tomlin, M. Papavassiliou, S. D. Farley, J. A. Cook, S. A. Sonsthagen, G. K. Sage, T. H. Heaton, S. L. Talbot, C. Lindqvist. 2023. Ancient bears provide insights into Pleistocene ice age refugia in Southeast Alaska. Molecular Ecology, 32: 3641-3656. DOI: 10.1111/mec.16960.

12. Krejsa, D. M., S. L. Talbot, G. K. Sage, S. A. Sonsthagen, T. S. Jung, A. J. Magoun, J. A. Cook. 2021. Dynamic northwestern landscapes in North America structured wolverine (Gulo gulo luscus) populations. Journal of Mammalogy 102:891-908. DOI:10.1093/jmammal/gyab045.

13. Jackson, D. J., J. A. Cook. 2020. A precarious future for peripheral populations of meadow voles (Microtus pennsylvanicus) and their cryptic sister species. Journal of Mammalogy 101:36-51. DOI:10.1093/jmammal/gyz196.

14. Sawyer, Y. E., S. O. MacDonald, E. P. Lessa, and J. A. Cook. 2019. Living on the edge: exploring the role of coastal refugia and island biology in the Alexander Archipelago of Alaska. Ecology and Evolution 9:1777-1797.

15. Galbreath, K. E., E. P. Hoberg, J. A. Cook, B. Armién, K. C. Bell, M. L. Campbell, J. L. Dunnum, A. T. Dursahinhan, R. P. Eckerlin, S. L. Gardner, S. E. Greiman, H. Henttonen, F. A. Jiménez, A. V. A. Koehler, B. Nyamsuren, V. V. Tkach, F. Torres-Pérez, A. Tsvetkova, A. G. Hope. 2019. Building an integrated infrastructure for exploring biodiversity: field collections and archives of mammals and parasites. Journal of Mammalogy 100: 382-393.

16. Colella, J. P., T. Lan, S. C. Schuster, S. L. Talbot, J. A. Cook, C. Lindqvist. 2018. Climate-mediated cyclic hybridization drives evolution at high-latitudes. Communications Biology 51: DOI: 10.1038/s42003-018-0058-y.

17. Colella, J. P., R. E. Wilson, S. L. Talbot, J. A. Cook. 2018. Implications of introgression for wildlife translocations. Conservation Genetics. 10.1007/s10592-018-1120-5.

18. Greiman, S., J. A. Cook, V. V. Tkach, E. P Hoberg, D. Menning, A. G. Hope, S. A Sonsthagen, S. L. Talbot. 2018. Museum metabarcoding: a novel method revealing gut helminth communities of small mammals across space and time. International Journal of Parasitology. 48:1061-1070.

19. Colella, J. P., E. Johnson, J. A. Cook. 2018. Reconciling molecules and morphology in North American Martes. Journal of Mammalogy 99:1323-1335.

20. O’Brien, S. L., J. A. Cook, S. D. Newsome. 2018. Small mammal niche differentiation within the Alexander Archipelago of Southeast Alaska. Journal of Mammalogy 99:108-116.

21. Arbogast, B. S., K. I. Schumacher, N. J. Kerhoulas, A. L. Bidlack, J. A. Cook, G. J. Kenagy. 2017. Genetic data reveal a cryptic species of New World flying squirrel: Glaucomys oregonensis. Journal of Mammalogy 98:1027-1041.

22. Sawyer, Y. E., M. J. Flamme, T.S. Jung, S. O. MacDonald, J. A. Cook. 2017. Diversification of deermice (Rodentia: genus Peromyscus) at their northwestern range limit: genetic consequences of refugial and island isolation. Journal of Biogeography 44:1572-1585.

23. Cook, J.A., Galbreath, K.E., Bell, K.C., Campbell, M.L., Carrière, S., Colella, J.P., Dawson, N.G., Dunnum, J.L., Eckerlin, R.P., Greiman, S.E., Fedorov, V., Hass, G.M.S., Haukisalmi, V., Henttonen, H., Hope, A.G., Jackson, D., Jung, T., Koehler, A.V., Kinsella, M., Krejsa, D., Kutz, S.J., Liphardt, S., MacDonald, S.O., Malaney, J.L., Makarikov, A., Martin, J., McLean, B.S., Mulders, R., Nyamsuren, B., Talbot, S.L., Tkach, V.V., Tsvetkova, A., Toman, H.M., Waltari, E.C., Whitman, J.L., Hoberg, E.P. 2017. The Beringian Coevolution Project: Holistic Collections of Mammals and Associated Parasites Reveal Novel Perspectives on Evolutionary and Environmental Change in the North. Arctic Science 3:585-617.

24. Dawson, N.G., J.P. Colella, M.P. Small, K.D. Stone, S.L. Talbot, J.A. Cook. 2017. Historical biogeography sets the foundation for contemporary conservation of mesocarnivores (genus Martes) of Northwest North America. Journal of Mammalogy 98: 715-730.

25. Sawyer, Y. E. and J. A. Cook. 2016. Phylogeographic structure in long-tailed voles (Rodentia: Arvicolinae) belies the complex Pleistocene history of isolation, divergence, and recolonization of Northwest North America’s fauna. Ecology and Evolution 6: 6633–6647.

26. Hope, A. G., J. Malaney. K. C. Bell, F. Salazar-Miralles, A. Chavez, J. A. Cook. 2016. Revision of widespread red squirrels (genus Tamiasciurus) highlights complexity of speciation within North American forests. Molecular Phylogenetics and Evolution 100:170-182.

27. Weckworth, B. V., N. G. Dawson, S. L. Talbot, and J. A. Cook. 2015. Genetic distinctiveness of Alexander Archipelago wolves (Canis lupus ligoni): reply to Cronin et al. (2015). Journal of Heredity 106(4):412-414.

28. Kohli, B. A., V. B. Fedorov, E. C. Waltari, and J. A. Cook. 2015. Phylogeography of a Holarctic rodent (Clethrionomys rutilus): Testing high-latitude biogeographic hypotheses and the dynamics of range shifts. Journal of Biogeography 42:377-389.

29. Kohli, B. A., K. A. Speer, C. W. Kilpatrick, N. Batsaikhan, D. Damdinbaza, J. A. Cook. 2014. Evolution in the subarctic: Multilocus systematics of a recent radiation of boreal rodents (Arvicolinae: Myodini). Molecular Phylogenetics and Evolution 76:18-29.

30. Hope, A.G., S, Y. W. Ho, J. L. Malaney, J. A. Cook, S. L. Talbot. 2014. Calibrating molecular evolutionary rates for comparative demographic inference of multiple species. Evolution. 68: 2689-2700.

31. Hope, A.G., N. Panter, J. A. Cook, S. L. Talbot, and D. Nagorsen. 2014. Multi-locus phylogeography and systematic revision of North American water shrews (genus: Sorex). Journal of Mammalogy. 95: 722-738.

32. Dawson, N. G., A. G. Hope, S. L. Talbot, and J. A. Cook. 2014. A multi-locus evaluation of ermine (Mustela erminea) across the Holarctic, testing hypotheses of Pleistocene diversification in response to climate change. Journal of Biogeography 41:464-475.

33. Malaney, J. L. and J. A. Cook. 2013. Using biogeographic history to inform conservation: The case of Preble’s jumping mouse. Molecular Ecology 22:6000-6017.

34. Greiman, S. E., V. V. Tkach, and J. A. Cook. 2013. Description and molecular differentiation of a new Staphylocystoides (Cyclophyllidea: Hymenolepididae) from the dusky shrew Sorex monticolus in Southeast Alaska. Journal of Parasitology 99: 1045-1049.

35. Deardorff, E.R., R. A. Nofchissey, J. A. Cook, A. G. Hope, A. Tsvetkova, S. L. Talbot, G. D. Ebel. 2013. Serological Evidence of Powassan Virus in Mammals from Russia, Alaska and New Mexico, 2004-2007. Emerging and Infectious Diseases. 19:2012-2016.

36. Malaney, J. L., C. J. Conroy, L. A. Moffitt, H. D. Spoonhunter, J. L. Patton, and J. A. Cook. 2013. Phylogeography of the western jumping mouse (Zapus princeps) detects deep structure in the southwestern United States. Journal of Mammalogy, 94:1016-1029.

37. Sonsthagen, S., G. Sage, M. Fowler, A. Hope, J. A. Cook, S. L. Talbot. 2013. Development and characterization of 21 polymorphic microsatellite markers for the barren-ground shrew, Sorex ugyunak (Mammalia: Sorcidae), through next-generation sequencing, and cross-species amplification in the masked shrew, S. cinereus. Conservation Genetics Resources. 5: 315-318.

38. Hope, A.G., K. A. Speer, J. R. Demboski, S. L. Talbot, and J. A. Cook. 2012. A climate for speciation: rapid spatial diversification among the Sorex cinereus complex of shrews. Molecular Phylogenetics and Evolution 64:671-684.

39. Weckworth, B.V., N. G. Dawson, S. L. Talbot, M. J. Flamme, J. A. Cook. 2011. Going coastal: Shared evolutionary history between coastal British Columbia and Southeast Alaska wolves (Canis lupus). PLoS One 6: e19582.

40. Weckworth, B., S. Talbot, J. A. Cook. 2010. Phylogeography of wolves (Canis lupus) in the Pacific Northwest. Journal of Mammalogy. 91:363-375.

41. Runck, A., M. Matocq, and J. Cook. 2009. Historic hybridization and persistence of a novel mito-nuclear combination in red-backed voles (genus Myodes). BMC Evolutionary Biology 9:114.

42. MacDonald, S. O., E. Waltari, R. Nofchissey, Y. Sawyer, and J. A. Cook. 2009. First records of deermice in southcentral Alaska. Northwestern Naturalist. 90:243-247.

43. Koehler, A. V. A., E. P. Hoberg, N. E. Dokuchaev, N. A. Tranbenkova, J. S. Whitman, D. W. Nagorsen, and J. A. Cook. 2009. Phylogeography of a Holarctic nematode, Soboliphyme baturini among mustelids: Climate change, episodic colonization, and diversification in a complex host-parasite system. Biological Journal of the Linnaean Society. 96:651-663.

44. Koehler, A. V. A., E. P. Hoberg, F. Torres-Pérez, and J. A. Cook. 2009. A molecular view of the superfamily Dioctophymatoidea (Nematoda). Comparative Parasitology 76:100-104.

45. Arai, S., S. Bennett, L. Sumibacay, J. A. Cook, J. Song, A. Hope, C. Parmenter, V. R. Nerurkar, T.L. Yates, and R. Yanagihara. 2008. Phylogenetically distinct hantaviruses in the masked shrew (Sorex cinereus) and montane shrew (Sorex monticolus) in the United States. American Journal of Tropical Medicine and Hygiene 78:348-351.

46. Lucid, M. K. and J. A. Cook. 2007. Cytochrome b haplotypes suggest an undescribed Peromyscus species from the Yukon. Canadian Journal of Zoology, 85:916-919.

47. Koehler, A. V. A., E. P. Hoberg, N. E. Dokuchaev, and J. A. Cook. 2007. Geographic and host range of the nematode Soboliphyme baturini across Beringia. Journal of Parasitology. 93:1070-1083.

48. Duszynski, D.W., A.J. Lynch, and J.A. Cook. 2007. Coccidia (Apicomplexa: Eimeriidae) infecting cricetid rodents from Alaska, U.S.A., and Northeastern Siberia, Russia, and description of a new Eimeria species from Myodes rutilus, the northern red-backed vole. Comparative Parasitology, 74:294-311.

49. Cook, J. A., N. G. Dawson, and S. O. MacDonald. 2006. Conservation of highly fragmented systems: the north temperate Alexander Archipelago. Biological Conservation. 133:1-15.

50. Goethert, H. K., J. A. Cook, E. W. Lance, and S. R. Telford III. 2006. Fay and Rausch 1969 Revisited: Babesia microti in Alaskan small mammals. Journal of Parasitology. 92:826-831.

51. Dragoo, J., A. Lackey, K. Moore, E. Lessa, J. A. Cook, and T. Yates. 2006. Phylogeography of the deer mouse (Peromyscus maniculatus) provides a predictive framework for research on hantaviruses. Journal of General Virology. 87:1997-2003.

52. Haas, G. E., J. R. Kucera, A. Runck, S. O. MacDonald, and J. A. Cook. 2005. Mammal Fleas (Siphonaptera) new for Alaska and the Southeastern mainland collection during seven years of a field survey of small mammals. Journal of the Entomological Society of British Columbia. 102:65-75.

53. Runck, A., and J. Cook. 2005. Post-glacial expansion of the southern red-backed vole (Clethrionomys gapperi) in North America. Molecular Ecology 14:1445-1456.

54. Weckworth B., S. Talbot, G. Sage, D. Person, and J. Cook. 2005. A signal for independent coastal and continental histories for North American wolves. Molecular Ecology 14:917-931.

55. Tomasik, E., and J. Cook. 2005. Mitochondrial phylogeography and conservation genetics of wolverine (Gulo gulo) in Northwestern North America. Journal of Mammalogy 86:386-396.

56. Lucid, M., and J. Cook. 2004. Phylogeography of Keen’s mouse (Peromyscus keeni) in a naturally fragmented landscape. Journal of Mammalogy. 85:1149-1159.

57. Cook, J. A., A. Runck, and C. J. Conroy. 2004. Historical biogeography at the crossroads of the northern continents: molecular phylogenetics of red-backed voles (Rodentia: Arvicolinae). Molecular Phylogenetics and Evolution 30:767-777.

58. MacDonald, S. O., A. M. Runck, and J. A. Cook. 2004. The heather vole (genus Phenacomys) in Alaska. Canadian Field-Naturalist. 118:438-440.

59. Cook, J., N. Dawson, S. MacDonald, and A. Runck. 2004. Mammal Diversity: Inventories of Alaska National Parks Stimulate New Perspectives. Alaska Park Science 3:22-27.

60. Murrell, B. P., L. A. Durden, and J. A. Cook. 2003. Host associations of the tick, Ixodes angustus, on Alaskan mammals. Journal of Medical Entomology 40:682-685.

61. Lessa, E. P., J. A. Cook, and J. L. Patton. 2003. Genetic footprints of demographic expansion in North America, but not Amazonia, following the Late Pleistocene. Proceedings of the National Academy of Sciences, USA 100:10331-10334.

62. Hoberg, E. P., S. J. Kutz, K. E. Galbreath, and J. Cook. 2003. Arctic biodiversity: From discovery to faunal baselines—revealing the history of a dynamic system. Journal of Parasitology 89:S84-S95.

63. Demboski, J. R. and J. A. Cook. 2003. Phylogenetic diversification within the Sorex cinereus complex (Insectivora: Soricidae). Journal of Mammalogy 84:144-158.

64. Small, M.P., K. D. Stone, and J.A. Cook. 2003. American marten (Martes americana) population structure across a landscape fragmented in time and space. Molecular Ecology 12:89-103.

65. Stone, K. and J. Cook. 2002. Molecular evolution of the Holarctic genus Martes. Molecular Phylogenetics and Evolution. 24:169-179.

66. Pyare, S., W. Smith, J. Nicholls, and J. Cook. 2002. Diets of northern flying squirrels, Glaucomys sabrinus, in southeast Alaska. Canadian Field-Naturalist 116:98-103.

67. Stone, K., R. Flynn, and J. Cook. 2002. Post-glacial colonization of northwestern North America by the forest associated American marten (Martes americana). Molecular Ecology 11:2049-2064.

68. Fleming, M. A. and J. A. Cook. 2002. Phylogeography of endemic ermine (Mustela erminea) in southeast Alaska. Molecular Ecology 11:795-808.

69. Bidlack, A. L. and J. A. Cook. 2002. A nuclear perspective on endemism in northern flying squirrels (Glaucomys sabrinus) of the Alexander Archipelago, Alaska. Conservation Genetics 3:247-259.

70. Bidlack, A., and J. A. Cook. 2001. Reduced genetic variation in insular northern flying squirrels (Glaucomys sabrinus) along the North Pacific Coast. Animal Conservation 4:283-290.

71. Demboski, J., and J. Cook. 2001. Phylogeography of the dusky shrew, Sorex monticolus (Insectivora, Soricidae): Insight into deep and shallow history in northwestern North America. Molecular Ecology 10:1227-1240.

72. Cook, J. A., A. L. Bidlack, C. J. Conroy, J. R. Demboski, M. A. Fleming, A. M. Runck, K. D. Stone, and S. O. MacDonald. 2001. A phylogeographic perspective on endemism in the Alexander Archipelago of the North Pacific. Biological Conservation 97:215-227.

73. Cook, J. A., and S. O. MacDonald. 2001. Should endemism be a focus of conservation efforts along the North Pacific Coast of North America? Biological Conservation 97:207-213.

74. Conroy, C. J., and J. A. Cook. 2000. Systematics of a Holarctic rodent: Microtus (Muridae). Journal of Mammalogy 81:344-359.

75. Stone, K. D. and J. A. Cook. 2000. Phylogeography of black bears (Ursus americanus) from the Pacific Northwest. Canadian Journal of Zoology 78:1-6.

76. Conroy, C. J. and J. A. Cook. 2000. Phylogeography of a post-glacial colonizer: Microtus longicaudus (Muridae: Rodentia). Molecular Ecology 9:165-175.

77. Demboski, J. R., K. D. Stone, and J. A. Cook. 1999. Further perspectives on the Haida Gwaii glacial refugium hypothesis. Evolution 53:2008-2012.

78. Fleming, M. A., E. A. Ostrander, and J. A. Cook. 1999. Microsatellite primers for American mink (Mustela vison) and ermine (Mustela erminea). Molecular Ecology 8:1352-1354.

79. Conroy, C. J. and Cook, J. A. 1999. MtDNA evidence for repeated pulses of speciation within arvicoline and murid rodents. Journal of Mammalian Evolution 6:221-245.

80. Conroy, C. J., J. R. Demboski & J. A. Cook. 1999. Mammalian biogeography of the Alexander Archipelago of Alaska: a north temperate nested fauna. Journal of Biogeography. 26:343-352.

81. Demboski, J. R., B. K. Jacobsen, and J. A. Cook. 1998. Endemism in the Alexander Archipelago: an assessment of genetic variation in flying squirrels (Rodentia: Glaucomys sabrinus). Canadian Journal of Zoology 76:1771-1777.

82. Lance, E. W. and J. A. Cook. 1998. Phylogeography of tundra voles (Microtus oeconomus): Beringia region and southcoastal Alaska. J. Mammalogy 79:53-65.

83. Cook, J. A., C. J. Conroy, and J. Herriges. 1997. Northern record of the water shrew, Sorex palustris, in Alaska. Canadian Field-Naturalist 111:638-640.

84. Parker, D., B. Lawhead, and J. A. Cook. 1997. Latitudinal limits of bats in Alaska. Arctic 50:256-265.

85. Parker, D. and J. A. Cook. 1996. Keen’s long-eared bat (Myotis keenii, Vespertilionidae) confirmed in Southeast Alaska. Canadian Field-Naturalist 110:611-614.

86. MacDonald, S. O., and J. A. Cook. 1996. The Land Mammal Fauna of Southeast Alaska. Canadian Field-Naturalist 110:571-599.

87. Demboski, J., G. Kirkland, and J. A. Cook. 1998. Glaucomys sabrinus. pp. 37-39 in D. J. Hafner, E. Yensen, and G. L. Kirkland, Jr. (eds). North American rodents: Status survey and conservation action plan. IUCN/SSC Rodent Specialist Group. Gland, Switzerland and Cambridge, UK. x + 171 pp.

88. Cook, J. A. 1998. Marmota caligata. pp. 39-40 in D. J. Hafner, E. Yensen, and G. L. Kirkland, Jr. (eds). North American rodents: Status survey and conservation action plan. IUCN/SSC Rodent Specialist Group. Gland, Switzerland and Cambridge, UK. x + 171 pp.

89. Conroy, C. J., and J. A. Cook. 1998. Microtus longicaudus pp. 93-95 in D. J. Hafner, E. Yensen, and G. L. Kirkland, Jr. (eds). North American rodents: Status survey and conservation action plan. IUCN/SSC Rodent Specialist Group. Gland, Switzerland and Cambridge, UK. x + 171 pp.

90. MacDonald, S. O., J. A. Cook, G. Kirkland, Jr., and E. Yensen. 1998. Microtus pennsylvanicus. pp. 99-101 in D. J. Hafner, E. Yensen, and G. L. Kirkland, Jr. (eds). North American rodents: Status survey and conservation action plan. IUCN/SSC Rodent Specialist Group. Gland, Switzerland and Cambridge, UK. x + 171 pp.

91. Cook, J. A. and G. Kirkland. 1998. Clethrionomys gapperi. pp. 87 in D. J. Hafner, E. Yensen, and G. L. Kirkland, Jr. (eds). North American rodents: Status survey and conservation action plan. IUCN/SSC Rodent Specialist Group. Gland, Switzerland and Cambridge, UK. x + 171 pp.

92. Lance, E. W. and J. A. Cook. 1998. Microtus oeconomus. pp. 97-99 in D. J. Hafner, E. Yensen, and G. L. Kirkland, Jr. (eds). North American rodents: Status survey and conservation action plan. IUCN/SSC Rodent Specialist Group. Gland, Switzerland and Cambridge, UK. x + 171 pp.

93. MacDonald, S. O. and J. A. Cook. 1998. Castor canadensis. pp. 59-60 in D. J. Hafner, E. Yensen, and G. L. Kirkland, Jr. (eds). North American rodents: Status survey and conservation action plan. IUCN/SSC Rodent Specialist Group. Gland, Switzerland and Cambridge, UK. x + 171 pp.

94. Yensen, E., J. A. Cook, and D. W. Nagorsen. 1998. Rodents of northwestern North America. Pp. 5-9, in North American rodents: action plans for species of conservation concern (D. J. Hafner, E. Yensen, and G. L. Kirkland, Jr., eds.). IUCN---the World Conservation Union, Gland, Switzerland.

95. Conroy, C.J., J. A. Cook. S. O. MacDonald, and K. J. Bagne. 1993. Discovery of black morph Peromyscus in Southeast Alaska. Peromyscus Newsletter 15:30-31.

MANUSCRIPTS SUBMITTED

Runck, A.M., M. Matocq, and J. A. Cook. In revision. Do contact zones evolve over time? A case of readily hybridizing red-backed voles (Genus Myodes). Molecular Ecology.

Dawson, N. G., M. P. Small, K. D. Stone, and J. A. Cook. In Revision. Conservation genetics and management considerations for high latitude island faunas: Marten (Martes americana and Martes caurina) along the North Pacific Coast. Biological Conservation.

Talbot, S.L., S. A. Sonsthagen, G. K. Sage, S. D. Farley, N. G. Dawson, and J.A. Cook. Island bears: insularity and gene flow among coastal brown bear populations of southeast Alaska. In revision, Journal of Mammalogy.

Sawyer, Y.E., and J. A. Cook. In revision. Phylogeographic dynamics in response to refugia and post-glacial colonization in a wide ranging vole. Molecular Ecology.

Naya, D., and J. A. Cook. Submitted. Body size changes in aquatic and terrestrial endotherms: does habitat matter? American Naturalist.

Hope, A. G., J. Malaney. K. C. Bell, F. Salazar-Miralles, A. Chavez, and J. A. Cook. Submitted. Revision of widespread red squirrels (genus Tamiasciurus) highlights complexity of speciation within North American forests. Molecular Phylogenetics and Evolution.

Malaney, J. L., J. R. Demboski, and J. A. Cook. In prep. Genetic, niche, and spatial divergence: exploring the continuum using integrative and comparative species delimitation in a conservation context.